Transcranial magnetic stimulation as a non-invasive brain stimulation technique， can regulate cortical excitability and promote functional compensation， which has been widely used in the rehabilitation of upper limb motor dysfunction after stroke. Under the guidance of neural function recovery model theory， different treatment programs of transcranial magnetic stimulation appeared. This paper describes the clinical application of transcranial magnetic stimulation under the guidance of different neurofunctional recovery models， and compares the curative effect， influencing factors and clinical application of different transcranial magnetic stimulation regimens， to provide reference for clinical treatment.